The CellProject class

The main class used by Monocle to hold single cell expression data. CellDataSet extends the basic Bioconductor ExpressionSet class.

Details

This class is initialized from a matrix of expression values Methods that operate on CellDataSet objects constitute the basic Monocle workflow.

Slots

embeddings

Matrix containing the predicted embeddings computed by ProjectNewdata.

refined.embeddings

Matrix containing the refined predicted embeddings computed by RefineProjection

data

data.frame containing the source data for cell projection.

cellmeta

data.frame containing the data generated during the cell projection analysis.

neighbors

Neighbor class containing the nearest neighbors for calculating the projection metrics.