Visualizing the mapping quality of projected query cells.

Source: R/visualization.R

Visualizing the mapping quality of projected query cells.

MapQCPlot(seu.q, p.adj.cutoff = 1e-04, map.q.cutoff = NULL)

Arguments

seu.q

The Seurat object, output of ProjectSVR::MapQuery().

p.adj.cutoff

The adjusted p value cutoff. Default: 1e-4

map.q.cutoff

The cutoff for mean.knn.dist. If not provided, the maximum value where mapQ.p.adj > 0 will be used.

Value

A combined plot for mapping quality.